| Issue Date | Title | Author(s) |
| 2020 | Analysis and Evaluation of Keystroke Dynamics as a Feature of Contextual Authentication | Bıçakcı, Kemal ; Salman, O.; Uzunay Y.; Tan, M. |
| 2016 | Anti-Cancer Drug Activity Prediction by Ensemble Learning | Tolan, Ertan; Tan, Mehmet |
| 2021 | Automated Molecule Generation Using Deep Q-Learning and Graph Neural Networks | Isik R.; Tan, Mehmet |
| 2016 | Biological Network Derivation by Positive Unlabeled Learning Algorithms | Pancaroglu, Doruk; Tan, Mehmet |
| Sep-2020 | Chemical Induced Differential Gene Expression Prediction on Lincs Database | Işık, R.; Ekşioğlu, I.; Maral, B. C.; Bardak, B. ; Tan, Mehmet |
| 2021 | A Convolutional Deep Clustering Framework for Gene Expression Time Series | Özgül, Ozan Frat; Bardak, Batuhan ; Tan, Mehmet |
| 2022 | Çizge Sinir Aglari ve Derin Takviyeli Ögrenme Kullanarak Otomatik Molekül Üretimi | Işık, Rıza |
| 2021 | Deepgrep: a Deep Convolutional Neural Network for Predicting Gene-Regulating Effects of Small Molecules | Bardak B.; Tan, Mehmet |
| 2023 | Derin Spektroskopi: Derin Öğrenme Yöntemleri ile Karmaşık Numunelerin Ftir Spektrumlarının Incelenmesi | Yaman, Mecit; Tan, Mehmet ; İnci, Özlem Gülüm; Garifullink, Ruslan; Jehiche, Asma; Kızılkaya, Mert |
| 2017 | Disease Outbreak Prediction by Data Integration and Multi-Task Learning | Bardak, Batuhan ; Tan, Mehmet |
| Sep-2019 | Drug Response Prediction by Ensemble Learning and Drug-Induced Gene Expression Signatures | Tan, Mehmet ; Özgül, Ozan Fırat; Bardak, Batuhan ; Ekşioğlu, Işıksu; Sabuncuoğlu, S. |
| 2014 | Drug Sensitivity Prediction for Cancer Cell Lines Based on Pairwise Kernels and Mirna Profiles | Tan, Mehmet |
| 2017 | Edge Distance Graph Kernel and Its Application To Small Molecule Classification | Tan, Mehmet |
| 2012 | Effective Enrichment of Gene Expression Data Sets | Şirin, Utku; Erdoğdu, Utku; Tan, Mehmet ; Polat, Faruk; Alhajj, Reda |
| Jun-2016 | Effective Gene Expression Data Generation Framework Based on Multi-Model Approach | Şirin, Utku; Erdoğdu, Utku; Polat, Faruk; Tan, Mehmet ; Alhajj, Reda |
| 2011 | Employing Machine Learning Techniques for Data Enrichment: Increasing the Number of Samples for Effective Gene Expression Data Analysis | Erdoğdu, Utku; Tan, Mehmet ; Alhajj, Reda; Polat, Faruk; Demetrick, Douglas; Rokne, Jon |
| 2010 | Feature Selection for Graph Kernels | Tan, Mehmet ; Polat, Faruk; Alhajj, Reda |
| 2018 | A Fully Unsupervised Framework for Scoring Driving Style | Özgül, Ozan Fırat; Çakır, Mehmet Ulaş; Tan, Mehmet ; Amasyalı, Mehmet Fatih; Hayvacı, Harun Taha |
| 2015 | A Graph-Based Pattern Recognition for Chemical Molecule Matching | Gökçer, Türkan Yeliz; Demirci, Muhammed Fatih ; Tan, M. |
| 2016 | Hastalık Salgınlarının İnternet Erişim ve Arama Verisi Kullanılarak Tahmini | Bardak, Batuhan |
| 2017 | Hücre Hattı Duyarlılık İmzaları ve Toplu Yapay Öğrenme Metotları ile Anti-kanser İlaç Aktivite Tahmini | Tan, Mehmet ; Sabuncuoğlu, Suna |
| 2021 | Improving Clinical Outcome Predictions Using Convolution Over Medical Entities With Multimodal Learning | Bardak, Batuhan ; Tan, Mehmet |
| 2014 | Improving Positive Unlabeled Learning Algorithms for Protein Interaction Prediction | Pancaroglu, Doruk; Tan, Mehmet |
| 2011 | Influence of Prior Knowledge in Constraint-Based Learning of Gene Regulatory Networks | Tan, Mehmet ; Alshalalfa, Mohammed; Alhajj, Reda; Polat, Faruk |
| 2013 | Information Theoretic Feature Selection for Weisfeiler-Lehman Graph Kernels | Tan, M. |
| 2013 | Integrating Machine Learning Techniques Into Robust Data Enrichment Approach and Its Application To Gene Expression Data | Erdoğdu, Utku; Tan, Mehmet ; Alhajj, Reda; Polat, Faruk; Rokne, Jon; Demetrick, Douglas |
| 2021 | İlaç Kaynaklı Gen İfadesi Değişimlerinin Tahmini ve İlaç Tasarımında Kullanımı | Tan, Mehmet ; Özadali Sari, Keriman |
| 2015 | Kimyasal Moleküllerin Eşlenmesi için Çizge Temelli Örüntü Tanıma Kullanımı | Gökçer, Yunus |
| 2022 | Kimyasalların Gen Düzenleyici Etkilerinin Tahmini için Transfer Öğrenimi | Maral, Bahattin Can |
| 2016 | Multi-Scale Modularity and Motif Distributional Effect in Metabolic Networks | Gao, Shang; Chen, Alan; Rahmani, Ali; Zeng, Jia; Tan, Mehmet ; Alhajj, Reda; Rokne, Jon; Demetrick, Douglas; Wei, Xiaohui |
| 2012 | Positive Unlabeled Learning for Deriving Protein Interaction Networks | Kılıç, C. ; Tan, M. |
| 5-Jul-2018 | Predicting Drug Activity by Image Encoded Gene Expression Profiles | Özgül, Ozan Fırat; Bardak, Batuhan ; Tan, Mehmet |
| Oct-2016 | Prediction of Anti-Cancer Drug Response by Kernelized Multi-Task Learning | Tan, Mehmet |
| 28-Dec-2015 | Prediction of Influenza Outbreaks by Integrating Wikipedia Article Access Logs and Google Flu Trend Data | Bardak, Batuhan ; Tan, Mehmet |
| 2014 | Protein Etkileşim Tahmini için Pozitif Etiketsiz Öğrenme Algoritmalarının Geliştirilmesi | Pancaroğlu, Doruk |
| 2012 | Protein Etkileşimlerinin Tahmininde Pozitif Etiketlenmemiş Öğrenme | Kılıç, Cumhur |
| 2012 | Revealing Mirna Regulation and Mirna Target Prediction Using Constraint-Based Learning | Alshalalfa, Mohammed; Tan, Mehmet ; Naji, Ghada; Alhajj, Reda; Polat, Faruk; Rokne, Jon |
| 2013 | Subtree Selection in Kernels for Graph Classification | Tan, Mehmet ; Polat, Faruk; Alhajj, Reda |
| 2020 | Toplu Öğrenme ile İlaç Kombinasyonlarının Sinerji Skor Tahmini | Ekşioğlu, Işıksu |
| 2016 | Topluluk Yöntemi ve İlaç İmzaları Kullanılarak Anti Kanser İlaçların Aktivite Tahmini | Tolan, Ertan |
| 2022 | Transfer Learning for Predicting Gene Regulatory Effects of Chemicals | Maral, Bahattin Can; Tan, Mehmet |
| 2021 | Using Clinical Drug Representations for Improving Mortality and Length of Stay Predictions | Bardak B.; Tan, Mehmet |
| 2022 | Yogun Bakim Hastalarinin Mortalite ve Hastanede Kalma Sürelerinin Derin Ögrenme Yöntemleri ile Tahmini | Bardak, Batuhan |
